miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Guizotia abyssinica
ABOUT THIS RECORD
ID:
MNEST000828
species:
Guizotia abyssinica
miRNA family:
MIR396
source:
miRNEST
Taxonomy by NCBI:
Guizotia abyssinica
Guizotia
Millerieae
Heliantheae alliance
Asteroideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACGGCTTTCTTGAACTG
miRNA*
GTTCAATAAAGCTGTGGGAAG
mismatches:
1
bulges:
0
View larger
pre-miRNA
AACTGCCATAAAAATGGTTCTCTTTCTATTC
TTCCACGGCTTTCTTGAACTG
CATGGGGTTTGATCTACCAGATCTGCGTTTTTATATGCAATCTTTGCG
GTTCAATAAAGCTGTGGGAAG
ATAGAGACAGAATCAAAACCAGAAGAAT
dot-bracket secondary structure
..............(((((((.((((((((.
((((((((((((.((((((((
((.(((....(((((...)))))(((((......))))).))).))))
)))))).)))))))))))).)
))))))).))))))).............
SIMILARITIES
miRBase
aly-MIR396a
:
0.00000000003
PMRD
ath-miRf11010-akr
:
0.000000000002
microPC
miR396
:
3e-30
UniProt
no hits
RFAM
MIR396: 0.0000000006
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record