miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Aplysia californica, Lottia gigantea, Crassostrea gigas, Biomphalaria glabrata, Mytilus californianus, Euprymna scolopes, Lymnaea stagnalis



ABOUT THIS RECORD

ID: MNEST009083
species: Crassostrea gigas
miRNA family: mir-184
source: miRNEST

Taxonomy by NCBI:
Crassostrea gigas Crassostrea Ostreidae Ostreoidea Ostreoida Pteriomorphia Bivalvia Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGACGGAGAACTGATAAGGG

miRNA*
GGTTGGTTTCTATCTGCT

mismatches: 5
bulges: 1

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pre-miRNA
GGGTGGACGGAGAACTGATAAGGGGAAGTTACGCCGGGGATAACAGGCTAATCCTTTAGTAGAGTTCGTATTGGCTAAAGGGATTGGCACCTCGATGTTG
AATCAGGGATAATAGCTTCAAGGCGTAGAGGCTTTGAAAGTAGGTCTGTTCGACCTTTAATACCCTACGTGATTTGAGTTCAGACCGGCGTAAGCCAGGT
TGGTTTCTATCTGCT


dot-bracket secondary structure
.((((((.(((.(((((((....((...(((((((((.((..((.(((((.(((((((((.((.......)).))))))))).(((...(((.(((....
.))).))).))))))))(((((((((((.((..((((....(((((.....)))))))))..))))))))..)))))))))...))))))))).))..))
)))))))).))))))



SIMILARITIES
miRBase rno-mir-184: 0.00004

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-184: 0.0008
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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