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Species belonging to selected taxon:
Aplysia californica
,
Lottia gigantea
,
Crassostrea gigas
,
Biomphalaria glabrata
,
Mytilus californianus
,
Euprymna scolopes
,
Lymnaea stagnalis
ABOUT THIS RECORD
ID:
MNEST009085
species:
Crassostrea gigas
miRNA family:
mir-1
source:
miRNEST
Taxonomy by NCBI:
Crassostrea gigas
Crassostrea
Ostreidae
Ostreoidea
Ostreoida
Pteriomorphia
Bivalvia
Mollusca
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAATGTTAATAAGTATGTA
miRNA*
CGTACAATATGAACATTCACTC
mismatches:
4
bulges:
1
View larger
pre-miRNA
TCATGTACAAA
TGGAATGTTAATAAGTATGTA
TCAAAAAATATTCTCATTATCTACAGGATTTGAAATGATGAATAATCGAGATATATATACACATGATA
TATAAGTA
CGTACAATATGAACATTCACTC
CTTGACTT
dot-bracket secondary structure
...........
..(((((((.(((.(((((((
((......((((((((((((((...))))....))))).)))))...))..(((((((.......)))
))))..))
)))))..))).)))))))....
........
SIMILARITIES
miRBase
gga-mir-1b
:
0.0004
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record