miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Aplysia californica, Lottia gigantea, Crassostrea gigas, Biomphalaria glabrata, Mytilus californianus, Euprymna scolopes, Lymnaea stagnalis



ABOUT THIS RECORD

ID: MNEST009085
species: Crassostrea gigas
miRNA family: mir-1
source: miRNEST

Taxonomy by NCBI:
Crassostrea gigas Crassostrea Ostreidae Ostreoidea Ostreoida Pteriomorphia Bivalvia Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAATGTTAATAAGTATGTA

miRNA*
CGTACAATATGAACATTCACTC

mismatches: 4
bulges: 1

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pre-miRNA
TCATGTACAAATGGAATGTTAATAAGTATGTATCAAAAAATATTCTCATTATCTACAGGATTTGAAATGATGAATAATCGAGATATATATACACATGATA
TATAAGTACGTACAATATGAACATTCACTCCTTGACTT


dot-bracket secondary structure
.............(((((((.(((.(((((((((......((((((((((((((...))))....))))).)))))...))..(((((((.......)))
))))..)))))))..))).)))))))............



SIMILARITIES
miRBase gga-mir-1b: 0.0004

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





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