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Species belonging to selected taxon:
Aplysia californica
,
Lottia gigantea
,
Crassostrea gigas
,
Biomphalaria glabrata
,
Mytilus californianus
,
Euprymna scolopes
,
Lymnaea stagnalis
ABOUT THIS RECORD
ID:
MNEST038874
species:
Lottia gigantea
miRNA family:
mir-190
source:
miRBase, original name:
lgi-mir-190
(
MI0010127
)
Taxonomy by NCBI:
Lottia gigantea
Lottia
Lottiidae
Acmaeioidea
Nacellina
Docoglossa
Eogastropoda
Gastropoda
Mollusca
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGATATGTTTGATATACTTGGT
miRNA*
CAAGTATCAAACATGTCACT
mismatches:
1
bulges:
2
View larger
pre-miRNA
AAGAGTTTGCTGATCTCTGTT
AGATATGTTTGATATACTTGGT
GGTTAATGGTTAAAAGTCCAC
CAAGTATCAAACATGTCACT
ACAGAGGTCTGTCTTT
T
dot-bracket secondary structure
(((((...((.(((((((((.
.(((((((((((..((((((((
((...............))))
)))))))))))))))))...
))))))))).))))))
)
SIMILARITIES
miRBase
cte-mir-190
:
0.00008
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"