miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Aplysia californica, Lottia gigantea, Crassostrea gigas, Biomphalaria glabrata, Mytilus californianus, Euprymna scolopes, Lymnaea stagnalis



ABOUT THIS RECORD

ID: MNEST038883
species: Lottia gigantea
miRNA family: mir-279
source: miRBase, original name: lgi-mir-279 (MI0010134)

Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACTAGATCCACACTCATCCA

miRNA*
GGTGATTGTGAGTCTGGTGCATG

mismatches: 3
bulges: 1

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pre-miRNA
GGCAGAGGTTAACCGATAAATGGGTGATTGTGAGTCTGGTGCATGTTCATGATGACGTCATGACTAGATCCACACTCATCCACAGAAGCGGGAAAAATCA
T


dot-bracket secondary structure
....((..((..(((.....(((((((.((((..((((((.((((.((.....))...))))))))))..)))).)))))))......)))..))..)).
.



SIMILARITIES
miRBase isc-mir-279: 0.0000000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-279: 0.000000006

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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