miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus



ABOUT THIS RECORD

ID: MNEST032426
species: Mus musculus
miRNA family: mir-1905
source: miRBase, original name: mmu-mir-1905 (MI0008315)

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CACCAGTCCCACCACGCGGTAG

miRNA*
GCTGCTGGATGCGTTTGATGGT

mismatches: 3
bulges: 2

View larger
pre-miRNA
GTGTTGGTCTGCTGCTGGATGCGTTTGATGGTCGCTCCCTTGGGGCCCACCACCAGTCCCACCACGCGGTAGGGTACTCGTA

dot-bracket secondary structure
(.((.(.(((((((((((.((.(.(((.((((.(((((...)))))..)))).))).).))))).)))))))).))).)...


SIMILARITIES
miRBase eca-mir-1905c: 1e-18

PMRD no hits

microPC no hits
UniProt sp|A1L020|MEX3A_HUMAN: 0.0000001

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: microarray, PCR

references

[1] He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R, BMC Genomics. 9:236(2008)., "MicroRNA-encoding long non-coding RNAs"




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