miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Aedes aegypti, Culex quinquefasciatus, Anopheles gambiae, Phlebotomus papatasi, Lutzomyia longipalpis, Anopheles stephensi, Polypedilum vanderplanki



ABOUT THIS RECORD

ID: MNEST008507
species: Culex quinquefasciatus
miRNA family: mir-29
source: miRNEST

Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCACCATTCGAAATCAGTAC

miRNA*
ACTGGCTTCCAAAGGTGAGTAGA

mismatches: 4
bulges: 1

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pre-miRNA
AACTCAAAATCTCAGCAAGTACTGGCTTCCAAAGGTGAGTAGATGGCATTCGATATCGCTCTAGCACCATTCGAAATCAGTACCTGGTGGATTAGTCCTG


dot-bracket secondary structure
.......((((.((.((.(((((((.(((.((.((((..((((..((..........)))))).)))).)).))).))))))).)).)))))).......



SIMILARITIES
miRBase cqu-mir-285: 3e-32

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: cqu-mir-285 from miRBase (MNEST036040)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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