miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST038480
species: Caenorhabditis elegans
source: miRBase, original name: cel-mir-4935 (MI0017721)

Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCCGGCGAGAGAGGTGGAGAGCG

miRNA*
 CCCTCCACTCTCTCGCCGCGGCT

mismatches: 2
bulges: 2
View larger
pre-miRNA
 AGTTACGGCGGGTTTTGCAAGCGCCGGCGAGAGAGGTGGAGAGCGCAGAGAAAGCAGTCGCGCTAGCTGTCGGCGCCCTCCACTCTCTCGCCGCGGCTGA
CAAATACGCT

dot-bracket secondary structure
......((((...((((..(((.((((((((((((.(((((.((((...((.(((((.....)).))).)).)))).)))))))))))))))).))))..
))))..))))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] de Lencastre A, Pincus Z, Zhou K, Kato M, Lee SS, Slack FJ, Curr Biol. 20:2159-2168(2010)., "MicroRNAs both promote and antagonize longevity in C. elegans"



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