miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Gadus morhua, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Anoplopoma fimbria, Esox lucius, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Sebastes rastrelliger, Solea senegalensis, Thunnus thynnus, Cynoglossus semilaevis



ABOUT THIS RECORD

ID: MNEST009012
species: Fundulus heteroclitus
miRNA family: mir-988
source: miRNEST

Taxonomy by NCBI:
Fundulus heteroclitus Fundulus Fundulidae Cyprinodontoidei Cyprinodontiformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCCTTGTTGCAGACCTCACAA

miRNA*
GTGATCGACGATAAGGGGG

mismatches: 2
bulges: 2

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pre-miRNA
TATGAAAATCCCCCTTGTTGCAGACCTCACAAAGTCCATTTCCAGAGCTTACGGCGTGTTGAAGGAGGATGACGGCATTGCATTCAGGGGTTTGTTTGTG
ATCGACGATAAGGGGG
TCTTGCGG


dot-bracket secondary structure
..((.....(((((((((((..((..((((((.((((.(((.(((.(((...)))...))).))).))))....(((..((........)).))))))))
)))..)))))))))))
.....)).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q90384|TDX_CYNPY: 0.00000000001

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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