miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Gadus morhua, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Anoplopoma fimbria, Esox lucius, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Sebastes rastrelliger, Solea senegalensis, Thunnus thynnus, Cynoglossus semilaevis

ABOUT THIS RECORD

ID: MNEST009498
species: Takifugu rubripes
miRNA family: miR-1777a
source: miRNEST

Taxonomy by NCBI:
Takifugu rubripes Takifugu Tetraodontidae Tetradontoidea Tetraodontoidei Tetraodontiformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
AGGCGGCGGTGGGGGGCGGGC

miRNA*
TCGCCCCCCAACCGTAACCTGG

mismatches: 2
bulges: 1

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pre-miRNA
GTGGCCCCTCGCTCGCCCCCCAACCGTAACCTGGACAGTCCCTCTAACATGGACCAGGATGGCATTAAAGGGGGCTCCCTGAGTCCTTACAGCCAGCACA
ACGCTACCTCACCAGGTAAAGAGGAAGGCGGCGGTGGGGGGCGGGCCTGCAACGA

dot-bracket secondary structure
((.((.....((((((((((((.((((..(((........(((((.((.(((...(((.((((......((((((((...))))))))...))))((...
..))..)))..))).))..))))).)))..))))))))))))))))..)).))..

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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