miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Danio rerio, Oryzias latipes, Salmo salar, Ictalurus punctatus, Oncorhynchus mykiss, Gasterosteus aculeatus, Pimephales promelas, Gadus morhua, Ictalurus furcatus, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Osmerus mordax, Anoplopoma fimbria, Cyprinus carpio, Esox lucius, Takifugu rubripes, Sebastes caurinus, Misgurnus anguillicaudatus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Rutilus rutilus, Poecilia reticulata, Oncorhynchus tshawytscha, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Oncorhynchus nerka, Sebastes rastrelliger, Thymallus thymallus, Solea senegalensis, Coregonus clupeaformis, Thunnus thynnus, Cynoglossus semilaevis, Salvelinus fontinalis



ABOUT THIS RECORD

ID: MNEST034198
species: Danio rerio
miRNA family: mir-10
source: miRBase, original name: dre-mir-10b-1 (MI0001364)

Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACCCTGTAGAACCGAATTTGTG

miRNA*
 CAGATTCGATTCTAGGGGAGTA

mismatches: 2
bulges: 1
View larger
pre-miRNA
 GTCTATATATACCCTGTAGAACCGAATTTGTGTGAAAAAATAACATTCACAGATTCGATTCTAGGGGAGTATATGGTC

dot-bracket secondary structure
..((((((((.((((.(((((.((((((((((...............)))))))))).))))))))).))))))))..


SIMILARITIES
miRBase tni-mir-10b-2: 3e-22

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-10: 1e-21

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP, Science. 299:1540(2003)., "Vertebrate microRNA genes"
[2] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
[3] Woltering JM, Durston AJ, Nat Genet. 38:601-602(2006)., "The zebrafish hoxDb cluster has been reduced to a single microRNA"



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