miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Gadus morhua, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Anoplopoma fimbria, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Sebastes rastrelliger, Solea senegalensis, Thunnus thynnus, Cynoglossus semilaevis



ABOUT THIS RECORD

ID: MNEST007409
species: Gadus morhua
miRNA family: mir-133
source: miRNEST

Taxonomy by NCBI:
Gadus morhua Gadus Gadidae Gadiformes Paracanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCTGGTTGAAGGGGACCAA

miRNA*
 GGTTCCATTTTACCAGCTTTA

mismatches: 4
bulges: 0
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pre-miRNA
 AAGCATAGCTACAGCTGGTTGAAGGGGACCAAATCCATTCAAGAGGTGATATGGTTCCATTTTACCAGCTTTAGCAAAGCA

dot-bracket secondary structure
..((...((((.(((((((.(((.(((((((.(((...((....)).))).))))))).))).))))))).))))...)).


SIMILARITIES
miRBase dre-mir-133a-1: 5e-36

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-133: 5e-24		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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