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Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum



ABOUT THIS RECORD

ID: MNEST001606
species: Nicotiana benthamiana
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATACTCCTTCCGTCCCAATTT

miRNA*
ATTGGGACAGAGAGGGTGTTT

mismatches: 2
bulges: 0

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pre-miRNA
GTGGTTGAACAATACTCCTTCCGTCCCAATTTATCTGGTACCGTTTGATCAGGCACAGAGTTTAAGAATGATTTTGTTTTTTTATAACTTGTGGTTTTAA
ACTGGCACTAGATATTTGTATGAGTGTTAATCAACTCATTGAGGGTAAAATGGAATTTTGAAGTTCAATTATTTCTAAATATAGAAAGATGATATTCTTT
TTGTGACAGACCAAAAAGGAAAAATTGACACATAAATTGGGACAGAGAGGGTGTTTGAGATCAA


dot-bracket secondary structure
.(((((....(((((((.(((.(((((((((((((((((.((((((((.....((((.((((.(((((((....)))))))....))))))))...))))
)).)).))))))(((....))).((((((((....((.((...(((...((((((....(((..(((....((((((....))))))..)))..))).))
)))).....)))...)).))...)))))))).))))))))))).))).)))))))...))))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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