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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST003827
species: Oryza sativa
miRNA family: MIRf541
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CACCTGTCAGTGACCACGTCC

miRNA*
ACGTGGTGACTGACATGTGAG

mismatches: 3
bulges: 0

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pre-miRNA
ACATAGGATTGGGATCCTCTGACATTCTGACGACGTGGTGACTGACATGTGAGCCCCACCGCTTGTGGGCCCACCTGTCAGTGACCACGTCCGTGTGCAG
TTCACGTTAGAGGATCCGGTT


dot-bracket secondary structure
...........((((((((((((...(((((((((((((.(((((((.(((.((((((.....)).)))).))).))))))).))))))))...)).)))
.....))))))))))))....



SIMILARITIES
miRBase no hits

PMRD osa-miRf11693-akr: 0.0000000000001

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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