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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST003891
species:
Oryza sativa
miRNA family:
MIRf1608
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGCCTTATACATCTTCGTCT
miRNA*
ACGAGGAGGAGGAGGCCAGC
mismatches:
4
bulges:
1
View larger
pre-miRNA
TCGCCATGGAGGCGGCCAGCC
TGGCCTTATACATCTTCGTCT
TCTACAACTTCAAGCCGCTGGAGAACAACCCGTACCTGTACGTCGGCGAAG
ACGAGGA
GGAGGAGGCCAGC
GGGCAGCTTGAGATGGAG
dot-bracket secondary structure
...((((..((((.(((.((.
(((((((.....(((((((((
((...........((((.((....(((.........))).)).))))))))
)))))))
....)))))))))
.))).))))...))))..
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf10604-akr
:
2e-52
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record