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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004153
species:
Oryza sativa
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAAGACTTTCTAGCATTGCCC
miRNA*
GCAATGCTAAAAAGTCTTACA
mismatches:
1
bulges:
0
View larger
pre-miRNA
AGCTACTTCCTCCGTTTTACAATG
TAAGACTTTCTAGCATTGCCC
ACATTCATTAACATCTATATATATGTGG
GCAATGCTAAAAAGTCTTACA
TTGTGA
AACGGAGGGAGTAGT
dot-bracket secondary structure
.(((((((((((((((((((((((
(((((((((.(((((((((((
((((....((.....)).....))))))
))))))))).)))))))))))
))))))
)))))))))))))))
SIMILARITIES
miRBase
osa-MIR441a
:
2e-18
PMRD
osa-miRf10787-akr
:
3e-20
microPC
miR1436
:
8e-33
UniProt
no hits
RFAM
MIR1122: 1e-28
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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