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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004560
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTACGTTGTGAAACGGAGGAA
miRNA*
CCTCCGTTTCACAATGTAGTC
mismatches:
1
bulges:
0
View larger
pre-miRNA
CTGTATTGTACTT
CCTCCGTTTCACAATGTAGTC
ATTCTAGTATTTCCCACATTCATATTGATGTTAATGAATCTAGATAGATATATATGCCTAGATTCA
TTAACATTAATATGAATGTGGAAAATGCTAGAATGAC
TTACGTTGTGAAACGGAGGAA
GTACTTTTTT
dot-bracket secondary structure
.......((((((
(((((((((((((((((((((
((((((((((((.((((((((((((((((((((((((((((((.((........)).)))))))))
))))))))))))))))))))).)))))))))))))))
.))))))))))))))))))))
))))......
SIMILARITIES
miRBase
osa-MIR809d
:
6e-56
PMRD
osa-miR809d
:
6e-56
microPC
miR809
:
3e-30
UniProt
sp|Q6K1U0|P2C17_ORYSJ: 0.00003
RFAM
MIR1122: 2e-59
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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