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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST045631
species:
Oryza sativa
source:
microPC, original name:
miR530
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCATTTGCACCTGCACCTA
miRNA*
GGTGCCAAGGCAGATGCA
mismatches:
5
bulges:
0
View larger
pre-miRNA
TGCATTTGCACCTGCACCTA
CAGAGAGGGAGATGGAGCAGCAAGCTAGCAATACGTGCTTGATCGCTATACGCTAGCTTCTTGCACCCATGTTGGTCCCT
GGCCCCTTCCTGATCCCTA
GGTGCCAAGGCAGATGCA
dot-bracket secondary structure
.((((((((....(((((((
..((.((((((..((.((((.((((((((.(((.(((......))))))..)))))))).)))).))......(((....
.))).))))))..))..))
)))))....)))))))).
SIMILARITIES
miRBase
osa-MIR530
:
7e-46
PMRD
osa-miRf10677-akr
:
7e-46
microPC
miR530
:
6e-74
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
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