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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST003831
species:
Oryza sativa
miRNA family:
MIRf162
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGCTTGCAACGCTTGACCAC
miRNA*
GATCAAACGTTGTAAATAAAA
mismatches:
3
bulges:
0
View larger
pre-miRNA
TACTACTCATTCCGTCTCACAATATAAGAGATTTTCAGTTT
TTGCTTGCAACGCTTGACCAC
TCGTCTTATTCAATTGTTTTTTACAAATATAGAAAACG
AAAAGTTATGTTTAATATACTCTAGGGTATAAAGTAAGTCACAAATAAAATAAATAATAATTTTAAAAAATTTTGAATAAAACGAGT
GATCAAACGTTGT
AAATAAAA
ACTTAAAATCTCTCATATTATTGGACGAAGGGAGTACA
dot-bracket secondary structure
...(((((.((.(((((...(((((.(((((((((.(((((
(((.((((((((.((((.(((
((((.((((((((..((((((((.((.(((........
.....((.((((((.((((((....))))))...)))).)).))............))).)).)))))))).)))))))).))))))
).)))).))))))
)).)))))
))).))))))))).)))))...))))).)).)))))..
SIMILARITIES
miRBase
osa-MIR818e
:
0.00000000000006
PMRD
osa-miRf11994-akr
:
1e-21
microPC
miR818
:
0.000003
UniProt
no hits
RFAM
MIR812: 4e-46
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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