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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST003937
species:
Oryza sativa
miRNA family:
MIR1171
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAGTGGAGTGGAGTGGTAG
miRNA*
AATCCTCTCTTCCCTTGAAC
mismatches:
5
bulges:
1
View larger
pre-miRNA
TTTTGAGGTGT
TGGAGTGGAGTGGAGTGGTAG
TGACGTGGAATGTGGTGTACTTATGCCTTAATTAATCCTGTTCCT
AATCCTCTCTTCCCTTGAAC
AAA
AA
dot-bracket secondary structure
........(((
(.(((.((((.((((...(((
.((((.(((.((.(((((....))))).....)).))))))).))
)...)))).))))))).)))
)..
..
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record