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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004159
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGGCAATGCTAGAAAGTCTT
miRNA*
GACTTTCTATCATTGCCTACA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTATTACTACCTCTATTTCAGGTTATAA
GACTTTCTATCATTGCCTACA
TTTATATAGATGGTAGATAATTTAGGCACATATATGTCTAGATTCATTAAC
ATATATATGAATG
TGGGCAATGCTAGAAAGTCTT
ATAATACAAAGCGGAGGAAGTATTT
dot-bracket secondary structure
....((((.(((((.(((...(((((((
(((((((((.(((((((((((
((((((((.(((.(((..((((((((((......))))))))))..))).)
)).))))))))))
))))))))).)))))))))))
)))))...))).))))).))))...
SIMILARITIES
miRBase
osa-MIR819j
:
1e-47
PMRD
osa-miR819j
:
1e-47
microPC
miR819
:
1e-23
UniProt
no hits
RFAM
MIR1122: 8e-31
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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