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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST045414
species:
Oryza sativa
miRNA family:
miR530-3p
source:
microPC, original name:
miR530
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGGTGCAGAGGCAGATGCAAC
miRNA*
TGCATTTGCACCTGCACCTAC
mismatches:
4
bulges:
0
View larger
pre-miRNA
GC
TGCATTTGCACCTGCACCTAC
AGAGAGGAAGATGGAGCAGCAAGCTAGCAATACGTGCTTGATCGCTATACGCTAGCTTCTTGCACACAATGTTGTTC
CTGGTCCCTTCCTGATCCCT
AGGTGCAGAGGCAGATGCAAC
dot-bracket secondary structure
..
(((((((((..(((((((((.
.((.((((((..(((((((((.(....).....((((..((..((((.....)))).))..))))....))))))))
)......))))))..))..)
))))))))..)))))))))..
SIMILARITIES
miRBase
osa-MIR530
:
2e-71
PMRD
osa-miRf10677-akr
:
2e-71
microPC
miR1030
:
2e-74
UniProt
no hits
RFAM
no hits
Identical with:
miR1030
from microPC (
MNEST044806
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
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deep sequencing data evidence