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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST046758
species:
Oryza sativa
source:
microPC, original name:
miR808
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGAATATGGGAAATGTTAGAA
miRNA*
CTGGCATTTCTCATATTCATAT
mismatches:
1
bulges:
0
View larger
pre-miRNA
TT
CTGGCATTTCTCATATTCATAT
TGATGCTAACGAATCTAGACATATATATCCATCTAGATTCATTAACATTAAT
ATGAATATGGGAAATGTTAGAA
dot-bracket secondary structure
.(
((((((((((((((((((((((
(((((.(((.(((((((((............))))))))).))).)))))))
))))))))))))))))))))).
SIMILARITIES
miRBase
osa-MIR808
:
9e-26
PMRD
osa-miR808
:
9e-26
microPC
miR809
:
8e-51
UniProt
no hits
RFAM
MIR1122: 7e-27
Identical with:
miR809
from microPC (
MNEST045342
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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deep sequencing data evidence