miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Cenchrus ciliaris



ABOUT THIS RECORD

ID: MNEST001702
species: Panicum virgatum
miRNA family: MIR2011
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCAGTGGCATATGCAAGTCT

miRNA*
ACCTGAATATGCAACTGCCCA

mismatches: 4
bulges: 0

View larger
pre-miRNA
GTAGCGTCTTTCGATTGGAGCTGCAGTGGCATATGCAAGTCTGTCGAGAAGATCAAGGATGTACATGCTCGCTGTGGTGAAGGAGATTCCGCAGTTTGGA
GCGCCCTTGTCTAGCACATACCCTCCTTTGCCCGTAAATATGTAGCGTGGTTGGTAAGCTCTCATGATGGACCTGAATATGCAACTGCCCAAGTGAACTC
AACAAGACC


dot-bracket secondary structure
.....((((((((.((((....(((((.((((((.((.((((((((.(((((.(((((.......((((((((((((...((....)))))))))...))
))).))))))))(((...((((..((..(((.(((....)))..))).))..)))).))).)).)))))))).)).)))))).))))))))).)))....
...))))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|A8MRC7|B3GT2_ARATH: 0.00000000006

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;