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Species belonging to selected taxon:
Panicum virgatum
,
Cenchrus ciliaris
ABOUT THIS RECORD
ID:
MNEST001746
species:
Panicum virgatum
miRNA family:
MIRf75
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCGAGACGAATCTTTTGAGG
miRNA*
TTAAAAGATTCGTCTCGTCAT
mismatches:
2
bulges:
0
View larger
pre-miRNA
TTTCAGAACTCACTTGGAAAC
TGCGAGACGAATCTTTTGAGG
CCTTTGACCGCATCATTAGCACATGTTGGTTACTGTAGCACTTATGGCTAATTATATA
CTAATTAGGC
TTAAAAGATTCGTCTCGTCAT
GTACATCCAAACTGTGTA
dot-bracket secondary structure
..........((((((((.((
.(((((((((((((((((((.
(((........((.((((((.((((...((((...))))...)))))))))).))...
......))))
))))))))))))))))))...
))...)))))...)))..
SIMILARITIES
miRBase
osa-MIR445c
:
0.00000003
PMRD
osa-miRf10240-akr
:
6e-22
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record