miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Panicum virgatum
,
Cenchrus ciliaris
ABOUT THIS RECORD
ID:
MNEST001760
species:
Panicum virgatum
miRNA family:
MIR1439
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTTTGGGACGGAGGGAGTATG
miRNA*
TACTCCCTCCGTCCCAAAATA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TGGGGCTTCCATG
TACTCCCTCCGTCCCAAAATA
AGTGTTGTTTTAGAAAATTTCAGACACATTACTCATCCTAAGAAATGACTTTCCCCTAATTACTTC
TAGCAATTGTGCTTCAAAACCGTGTTATTTATTTGGTTTTCTGGATCCTCAATGAATGCATATACATCGGAACTAGAAAAGTGACATCTGCTAAGTATTT
GATTGGCTCTATGCGTTTTCCTGCAATGTTTTCTTTGTACTTGATATTGATTTAACTAGATGGATCTCATTACAAGCTAAAACAACACTTTGTGGGACAA
AATTTGAATGCTAAAACCAACACTTA
CTTTGGGACGGAGGGAGTATG
TAGTTACTTT
dot-bracket secondary structure
((((...)))).(
((((((((((((((((((.((
(((((((((((((.....((((((..((((.((.......)).))))...(.....(((.((((..
(((((..(((((((..((((((.((.....)).))))))(((((.(((...(((.((....)).))).))).))))).)))).)))..))))))))).))
)...)((.....)).((.((((((((((((((.((((((..(((.(((.((((....)))).))).))).))))))..)))))).....)))))))).))
..))))))..)))))).)))))))))
.))))))))))))))))))).
..........
SIMILARITIES
miRBase
osa-MIR1862c
:
0.00002
PMRD
osa-miRf10381-akr
:
0.000001
microPC
miR1439
:
0.000001
UniProt
no hits
RFAM
MIR806: 0.0000004
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record