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Species belonging to selected taxon:
Panicum virgatum
,
Cenchrus ciliaris
ABOUT THIS RECORD
ID:
MNEST001789
species:
Panicum virgatum
miRNA family:
MIR1439
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTTAGAACGGAGTGAGTATT
miRNA*
TACTCCCTCCGTTCCAAATTA
mismatches:
2
bulges:
0
View larger
pre-miRNA
GTGAACTCCCGGAACTGTAATTTTTACCGAGG
TACTCCCTCCGTTCCAAATTA
TAAGTCACTCCAAGAATCTTGGAGAGTCAAAATTTTTCAAGTTTGAC
CAAATTTATATGATAAGCTAATAACATTTATGATACCAATTAAGTATTATTAGATTCTTTGTTAGCTATATTTTCATAGTGCACCTATTTGATGTCACAA
ATCTTTATATTTTTGTCTATAATTTTGGTCAAATTTTAAGATGGTTTGACTCTTTAAAATTCCTAGAATGACTTTA
ATTTAGAACGGAGTGAGTATT
AGA
AAGCAGTGCAGGGCGCGCTCGCTCGG
dot-bracket secondary structure
.........(((..............))).((
(((((.((((((((.((((((
.((((((.((...((((.(((((((((((((..((((.(((((((((
((((.(((((.((((((.....((.((((.(((((.(((.((.(((((((.(((.....(((.....))).))).)))))))...)).))).))))).))
)).))......))))))))))).))))))))))))).))))...))))))))))))).))))...)).))))))))
)))).)))))))).)))))))
...
.((((((((.....))))).)))...
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf11316-akr
:
0.0003
microPC
miR1439
:
0.0003
UniProt
no hits
RFAM
MIR1122: 0.00000000009
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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