miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Cenchrus ciliaris



ABOUT THIS RECORD

ID: MNEST001800
species: Panicum virgatum
miRNA family: miR827
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGTTGGTGGTCATCTAACC

miRNA*
TTAGATGACCATCAGCAAAC

mismatches: 0
bulges: 1

View larger
pre-miRNA
AGCTCCGAACTTGTTTTGTTGGTGGTCATCTAACCATGCTCCGATCCGGTGCATGGATCATGGATTGCGGTCATGACCCATGACCGTCATGGACTGATCA
TGGTCTTGCGTGCGCGGTTAGATGACCATCAGCAAACATGTTCATGAG


dot-bracket secondary structure
......((((.(((((.((((((((((((((((((.(((.(((...)))(((..(((((((((((.(((((((((...))))))))).)).......)))
)))))).))).))).))))))))))))))))))))))).)))).....



SIMILARITIES
miRBase bdi-MIR827: 0.000000002

PMRD osa-miR827b: 0.0000005

microPC miR827: 0.000002
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;