miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Panicum virgatum
,
Cenchrus ciliaris
ABOUT THIS RECORD
ID:
MNEST001833
species:
Panicum virgatum
miRNA family:
MIR444
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTTGCCTCAAGCTTGCTGCC
miRNA*
CACCAAGCATGAGGCAGGAAC
mismatches:
3
bulges:
0
View larger
pre-miRNA
TATTGCATGTGGTGG
CACCAAGCATGAGGCAGGAAC
TGCATTACTTGCAAGGAAGTCACAAAATCAATTGGAAGATCATACTTGTGGCTTTCTTGCAAGT
TGTGCAGT
TGTTGCCTCAAGCTTGCTGCC
TCCCTTTGCCAG
dot-bracket secondary structure
....(((...((.((
((.(((((.((((((((.(((
(((((.(((((((((((((((((((.....(((....))).....)))))))))))))))))))
.)))))))
).)))))))).))))).))))
..))..)))...
SIMILARITIES
miRBase
ssp-MIR444b
:
3e-48
PMRD
tae-miR444
:
3e-23
microPC
miR444
:
7e-40
UniProt
sp|Q6Z6W2|MAD57_ORYSJ: 0.0001
RFAM
MIR444: 2e-46
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record