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Species belonging to selected taxon:
Panicum virgatum
,
Cenchrus ciliaris
ABOUT THIS RECORD
ID:
MNEST001851
species:
Panicum virgatum
miRNA family:
MIR169
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAGTCAAGGATGACTTGCCTA
miRNA*
GGCGGTCACCTTGGCTAGT
mismatches:
0
bulges:
2
View larger
pre-miRNA
GATCAGTTGTAGGACGAAGGAAGAAGAGGGGTCTTCCATGAGGGCCATAGCCAGCCTTTGG
TAGTCAAGGATGACTTGCCTA
CATGGCCTTGTGAGTCCC
GGTTGCATAGCCGGTTCAGCTAGGTCTGTG
GGCGGTCACCTTGGCTAGT
CTGAGTGGCTTTTGCCTCTCATGGGAGGCTTCTTCTTCTCTGTTAGTCATG
ATATATA
dot-bracket secondary structure
.((((..((...((((..(((((((((..((((((((((((((((...(((((..(((.((
(((((((((.(((((.(((((
((.(((((.(((((..((
((((....)))))))))).).)))))))))
))))))))))))))))).)
).))))))))...))).)))))))))))))))))))))).))))...))))
)).....
SIMILARITIES
miRBase
sbi-MIR169c
:
9e-34
PMRD
sbi-miR169c
:
9e-34
microPC
no hits
UniProt
no hits
RFAM
MIR169_5: 2e-32
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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