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Species belonging to selected taxon:
Panicum virgatum
,
Cenchrus ciliaris
ABOUT THIS RECORD
ID:
MNEST046133
species:
Panicum virgatum
miRNA family:
MIR399
source:
microPC, original name:
miR399
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAATTGCCCTG
miRNA*
GGGTATATCTCCTTTGGCACG
mismatches:
2
bulges:
0
View larger
pre-miRNA
CA
GGGTATATCTCCTTTGGCACG
GAGGCACGCAACCATCCGTAGGTATGTTAATGGATGGTGGCAAGCTGCTGGCTTGGAAGATGCAGCATAATAGCCGT
GCG
TGCCAAAGGAGAATTGCCCTG
dot-bracket secondary structure
((
(((((..((((((((((((((
.((((..((.(((((((((..........))))))))).))..(((((...((....))..)))))......))).)
.))
))))))))))))..)))))))
SIMILARITIES
miRBase
tae-MIR399
:
0.000000006
PMRD
tae-miR399
:
0.000000006
microPC
miR399
:
3e-66
UniProt
no hits
RFAM
mir-399: 0.0000004
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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