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Species belonging to selected taxon:
Panicum virgatum
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Cenchrus ciliaris
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST001770
species:
Panicum virgatum
miRNA family:
miR166d
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGAATGTTGTCTGGTTCAAGG
miRNA*
TCGGACCAGGCTTCATTCCCC
mismatches:
3
bulges:
0
View larger
pre-miRNA
AGAAGAGATATGAAGCTATTCGCTTCTGAGT
GGAATGTTGTCTGGTTCAAGG
TCTTGCCTGTGATTTGAGGATGGAGATCTCGTGTAGTTTTCCATTCCT
CGAATCTGCGGGATC
TCGGACCAGGCTTCATTCCCC
TCAGATATAGCTTCAAAAGATGTCGATC
dot-bracket secondary structure
....((.((.(((((((((.....((((((.
((((((..(((((((((.(((
((((((....((((((((((((((((.((.....)).)))))).))))
)))))).))))))))
).)))))))))..)))))).)
))))).)))))))))....)).))....
SIMILARITIES
miRBase
bdi-MIR166c
:
1e-17
PMRD
osa-miR166a
:
1e-16
microPC
miR166
:
0.0000000001
UniProt
no hits
RFAM
mir-166: 0.0000000000002
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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