miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001788
species: Panicum virgatum
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTACTCCCTCCGTTCCAAATT

miRNA*
 TTTAGAACGGAGTGAGTATTA

mismatches: 2
bulges: 0
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pre-miRNA
 TTTTTACCGAGGTACTCCCTCCGTTCCAAATTATAAGTCACTCCAAGAATCTTGGAGAGTCAAAATTTTTCAAGTTTGACCAAATTTATATGATAAGCTA
ATAACATTTATGATACCAATTAAGTATTATTAGATTCTTTGTTAGCTATATTTTCATAGTGCACCTATTTGATGTCACAAATCTTTATATTTTTGTCTAT
AATTTTGGTCAAATTTTAAGATGGTTTGACTCTTTAAAATTCCTAGAATGACTTTAATTTAGAACGGAGTGAGTATTAGAAAGCAG

dot-bracket secondary structure
..........(((((((.((((((((.((((((.((((((.((...((((.(((((((((((((..((((.(((((((((((((.(((((.((((((...
..((.((((.(((((.(((.((.(((((((.(((.....(((.....))).))).)))))))...)).))).))))).)))).))......)))))))))
)).))))))))))))).))))...))))))))))))).))))...)).)))))))))))).)))))))).))))))).........


SIMILARITIES
miRBase no hits

PMRD osa-miRf11316-akr: 0.0002

microPC miR1439: 0.0002		UniProt no hits

RFAM MIR1122: 0.00000000007		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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