miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001827
species: Panicum virgatum
miRNA family: miR156b
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCTCACTCTCTATCTGTCAGT

miRNA*
 TGACAGAAGAGAGTGAGCAC

mismatches: 1
bulges: 1
View larger
pre-miRNA
 GAGGAGCTGGGTTTTGAAGGTTTGACAGAAGAGAGTGAGCACACATGGTGGTTTCTTAGCATGAGTGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTAT
CTGTCAGTCACTCATTAGGCCCATCAC

dot-bracket secondary structure
...((..((((((((((....(((((((((((((((((((((.((((((....((((((((((.....)))))))))))))))).))))))))))))).)
)))))))....)))..)))))))))..


SIMILARITIES
miRBase ssp-MIR156: 3e-51

PMRD zma-miR156b: 2e-43

microPC miR156: 2e-42		UniProt no hits

RFAM mir-156: 2e-37		most similar mature miRNAs

Identical with: miR156 from microPC (MNEST045630)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;