miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST045516
species: Panicum virgatum
source: microPC, original name: miR156

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGAAGAGAGTGAGCAC

miRNA*
 GCTCACTCTCTATCTG

mismatches: 0
bulges: 1
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pre-miRNA
 CAGAAGAGAGTGAGCACACATGGTGGTTTCTTAGCATGAGTGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTG

dot-bracket secondary structure
(((((((((((((((((.((((((....((((((((((.....)))))))))))))))).))))))))))))).))))


SIMILARITIES
miRBase ssp-MIR156: 8e-35

PMRD sbi-miR156b: 3e-34

microPC miR156: 5e-39		UniProt no hits

RFAM mir-156: 6e-33

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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