miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST045712
species: Saccharum officinarum
miRNA family: MIR444
source: microPC, original name: miR444

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCAGTTGTTGCCTCAAGCTT

miRNA*
 GCATGAGGCAGGAACTGCATT

mismatches: 2
bulges: 0
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pre-miRNA
 AAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAGGACATACTTGTGGTTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAAG
CTT

dot-bracket secondary structure
((((.((((((((.((((((((.((((((((((((..(((((...................)))))..)))))))))))).)))))))).)))))))).)
)))


SIMILARITIES
miRBase ssp-MIR444a: 9e-54

PMRD osa-miR444f: 0.0000000000003

microPC miR444: 9e-54		UniProt no hits

RFAM MIR444: 3e-32

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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