miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008461
species: Sorghum bicolor
miRNA family: MIRf1396
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGGCCTCCTCGTGCTCCTCC

miRNA*
ACGAGGACGAGGAGGCCGCCT

mismatches: 4
bulges: 0

View larger
pre-miRNA
TCGACGACGAGGACGAGGACGAGGAGGCCGCCTCCATCCACATCCATCCCGCCTCGCCTCAGCTGTCTCCGACCGCCCTCTGCCTACTTTTACTCCTACT
CCTCCCCGTCGGCGTCGTCGTACAACGGCTGGGCCGACCTCGCCGCGGCGCCCGACACCCCTTTCCCCTTCCCCTTCCCCCTCTCCCTCCCGCCGCAGCC
CACCACGCATGGCCTCCTCGTGCTCCTCCCCACCGTCG


dot-bracket secondary structure
....(((((.(((.(((.(((((((((((((...................)).(((.(((((((((...((((((((.......................
..........))))..))))....))))))))).))).......((((((...((................................)).)))))).((.
......))..))))))))))).))).)))....)))))



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





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