miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Panicum virgatum
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Cenchrus ciliaris
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST008486
species:
Sorghum bicolor
miRNA family:
miR159a
source:
miRNEST
Taxonomy by NCBI:
Sorghum bicolor
Sorghum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GAGCTCCTATCATTCCAATGA
miRNA*
TTTGGATTGAAGGGAGCTCTG
mismatches:
3
bulges:
0
View larger
pre-miRNA
CTGATGCTTGGATTCGAAGCG
GAGCTCCTATCATTCCAATGA
AGGGCCCTTTTCATGGGTGGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTCA
TCATGTATCTGTGTATGTACTCTAGAGGGCCGGAGAAGAGATTCATGTGGTCGTCAGTCTTTGAGATAGGCTTGTGATTTGCATGACCGAGGAGCTGCAC
CGTCCCCTTGCTGGCCGCTC
TTTGGATTGAAGGGAGCTCTG
CATCCTGATCCATCCATT
dot-bracket secondary structure
..((((..((((((.((.(((
((((((((.(((.(((((.((
..((((.....((.(((((((...(((.((((.(((((.....(((...(((((((((
...((..((((.((....))..)))).(((((..(((....)))...)))))..)).....)))))))))...))).....))))).)))).)))...))
)).)))..))..))))..))
.))))).))).))))))))))
).))..))))))..))))
SIMILARITIES
miRBase
sbi-MIR159
:
3e-117
PMRD
sof-miR159a
:
9e-84
microPC
miR319
:
4e-21
UniProt
no hits
RFAM
MIR159: 1e-126
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record