miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008486
species: Sorghum bicolor
miRNA family: miR159a
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GAGCTCCTATCATTCCAATGA

miRNA*
TTTGGATTGAAGGGAGCTCTG

mismatches: 3
bulges: 0

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pre-miRNA
CTGATGCTTGGATTCGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCCTTTTCATGGGTGGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTCA
TCATGTATCTGTGTATGTACTCTAGAGGGCCGGAGAAGAGATTCATGTGGTCGTCAGTCTTTGAGATAGGCTTGTGATTTGCATGACCGAGGAGCTGCAC
CGTCCCCTTGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCCTGATCCATCCATT


dot-bracket secondary structure
..((((..((((((.((.(((((((((((.(((.(((((.((..((((.....((.(((((((...(((.((((.(((((.....(((...(((((((((
...((..((((.((....))..)))).(((((..(((....)))...)))))..)).....)))))))))...))).....))))).)))).)))...))
)).)))..))..))))..)).))))).))).))))))))))).))..))))))..))))



SIMILARITIES
miRBase sbi-MIR159: 3e-117

PMRD sof-miR159a: 9e-84

microPC miR319: 4e-21
UniProt no hits

RFAM MIR159: 1e-126
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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