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Species belonging to selected taxon:
Panicum virgatum
ABOUT THIS RECORD
ID:
MNEST001829
species:
Panicum virgatum
miRNA family:
MIR156
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCACG
miRNA*
GCCTTTATTTTTTTTTCAGG
mismatches:
3
bulges:
1
View larger
pre-miRNA
GGGCG
GCCTTTATTTTTTTTTCAGG
ACATCGTAACAATCCAAAATTCAAAGTTTCGGACATCAGGAAACCAAGTCCGCTTCCTCGGAACCGGGGCAATGG
AGGCACCAACCGAAGGAAGCATCATTGCATCAGGGCATAGTGGGAAAAGGAGTCCTCGAACAAGGATGGTTTTGGGAGCTGGACCTCATGAGTTGTTGGG
ATGGCGCTGCCACTGCCACTGCCACTGCCAAGGGGGTCGAGAGCCTGAAACCGCGCATGAAGATCAAGCGCTGTGCCGTCTTGCCAGAGCCCTGGTGATG
AAGCTTGCATCACTGTGTTGGAGGTGCTGGCGAGGGTGCTCAGGCCAGGGTGCAGCTGAGTGGTAGGGTGGTTGTTGCCAGCACCAGCCGAATTGTT
TGA
CAGAAGAGAGAGAGCACG
CTGA
dot-bracket secondary structure
.((((
((.(((.(((((((.(((..
.......((((((((.((((.....)))).)))((.(((((...(((((..((((((((((.....((((.....
..)).))..))).))))))).((((..(((((((((...((((((...((.(((((......)))))(((((((((..((.((((((.(((((.((..((
.((((...))))...))...)).)))..))..)))))).))..)))))))))((((.(((...))).))))....)).))))))....))))))))))))
).)))))..)).)))))((((.(((((((((((.(.(((((..((((.(((...)))...)))).)))))..).)))))))))))..)))).)))))
)))
.))))))).))).)).))
))..
SIMILARITIES
miRBase
dan-mir-289
:
0.000006
PMRD
pts-miR157
:
0.00000002
microPC
miR157
:
0.0003
UniProt
sp|A3A2Z8|SPL3_ORYSJ: 0.000000000002
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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