miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST000078
species: Arachis duranensis
miRNA family: MIRf331
source: miRNEST

Taxonomy by NCBI:
Arachis duranensis Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATAGCTGAAGAAGGAGAGGCT

miRNA*
 TCTCTTCTCTTCTTCTGTCT

mismatches: 4
bulges: 1
View larger
pre-miRNA
 CCCAATATCTGCACCCTTATTTTCTCTTCTCTTCTTCTGTCTCTCTTAAACATATCACCTGTACACCATGAAGATCTTCAACCCTTTCTGAATCGTTTTT
CCAAAACGATGAGTGTCCCTCGGACACTATATTCCTCAAAGGAATGAACCTCTCCAATCTTCACCATTCCACATTCTCCCTCGTCTCTTGGCCATACAAT
TAGCCTTCACAACCAATAATCTTACTAGCTTTCTTTGTTTTCCTTTTCTTTCTCTGGAAACTTCATCCAATGGATCTGAAAAACGAGATGGAGACAAGTT
ATCGAACAGCGGTAGGATGGTGATCTTTGAAAAGTACGAGACGGGGCGCGTGTTAGGGTAGGGGAACTTTGCGAAGGTATACTACGGGAGGAACCTGGCG
ACGAGTGAAAGTGTGGCGATTAAGGTGATAAAGAAGGATAGCTGAAGAAGGAGAGGCTGATAGAGCAGATTAAGAGA

dot-bracket secondary structure
......((((((....(((((.((((((((((((..((((((.((((.....((((((((...((...))..((((.(((...(((((...((((((((.
..)))))))).(((((((...))))))).(((((((...))))))).((((.(((((..(((.((..(((((((....(((((((((..(((........
..))).((((........((((((((.((..((((((((((..(((((.(((..((((.......))))..)))...)))))..))))))))))...(((
....))).)))))))))).))))...((....))...)))))))))...))))..)))...)))))..))).))))))..(((.((((.....))))...
...))))))))..))).)))).)))))))))))).))))))..)))).))))))))..))))).)))))).......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q8W1D5|CIPKP_ARATH: 0.000000002

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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