ABOUT THIS RECORDspecies: Arachis hypogaea
source: miRBase, original name: ahy-MIR3517 (MI0015350)
Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGACCACTGTGATCCCGGAA miRNA* CCAGCGTCACCGGTGTCAGC mismatches: 3 bulges: 2 |
pre-miRNA
GCGTATCTAACCCAAGGAAGTCTGACCACTGTGATCCCGGAATAACCCAAGGGGTACCCCCCTTCCAGCGTCACCGGTGTCAGC
dot-bracket secondary structure
.....................(((((.((((((((.(.(((........(((((....)))))))).).)))).))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
GCGTATCTAACCCAAGGAAGTCTGACCACTGTGATCCCGGAATAACCCAAGGGGTACCCCCCTTCCAGCGTCACCGGTGTCAGC
dot-bracket secondary structure
.....................(((((.((((((((.(.(((........(((((....)))))))).).)))).))))))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
