miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040642
species: Glycine soja
source: miRBase, original name: gso-MIR2218 (MI0015367)

Taxonomy by NCBI:
Glycine soja Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGCCGATTCCACCCATTCCTA

miRNA*
GGAGATGGGAGGGTCGGTAAAG

mismatches: 1
bulges: 2

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pre-miRNA
TGAGGAAGTGATGGGAGATGGGAGGGTCGGTAAAGGATAACAGCGTCTCTATGATTAATTGTTGTGTTGTTTATTCTTTTGCCGATTCCACCCATTCCTA
TGATTTTCTTT


dot-bracket secondary structure
.((((((((.(((((((.((((.((((((((((((((.(((((((.(..((........))..))))))))...))))))))))).))).))))))))))
).)))))))).



SIMILARITIES
miRBase pvu-MIR2118: 0.00000000009

PMRD vun-miR2118: 0.000000000000002

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references

[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"




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