miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST048681
species: Lotus japonicus
source: PMRD, original name: lja-miR2199

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATACACTAGCACGGGTCAC

miRNA*
 GACCCGTTCTAGTGTATCAAG

mismatches: 1
bulges: 0
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pre-miRNA
 ATCTGATGCACAATTGTGACCCGTTCTAGTGTATCAAGCGATTTTCAGTCCATTGATTCCATGTTTTAAGATAATTTTGAGAGTTCTCATATCTTGATAT
CTTGATCTGAAATTCTCTGATACACTAGCACGGGTCACCGTTGTAAGTCACGT

dot-bracket secondary structure
...((((..(((((.(((((((((.(((((((((((.(.((.((((((..((..(((........((((((((....((((....)))))))))))).))
).))..)))))).)).)))))))))))).))))))))).)))))..))))...


SIMILARITIES
miRBase mtr-MIR2199: 0.000002

PMRD mtr-miR2199: 0.000002

microPC no hits		UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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