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Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Glycine soja
,
Glycyrrhiza uralensis
,
Lotus japonicus
,
Medicago sativa
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Trifolium pratense
,
Cajanus cajan
,
Cicer arietinum
,
Glycine max
,
Vigna unguiculata
,
Medicago truncatula
,
Phaseolus vulgaris
ABOUT THIS RECORD
ID:
MNEST040770
species:
Medicago truncatula
miRNA family:
MIR2111
source:
miRBase, original name:
mtr-MIR2111m
(
MI0011841
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAATCTGCATCCTGAGGTTTA
miRNA*
AGCCTCGGAGTGCGGATTATC
mismatches:
2
bulges:
0
View larger
pre-miRNA
ATATTGGGTGAGGATGGGA
TAATCTGCATCCTGAGGTTTA
AGACAATATTTGCGTAATTTCCAAAAAATAAATAAATTGCGTAATCGTTTCTA
AGCCTCG
GAGTGCGGATTATC
TTTTCCTATCACCAATGC
dot-bracket secondary structure
.((((((...((((..(((
(((((((((..((((((((((
.((.(((..(((((((((((.............)))))))))))..)))))))
)))))))
)..)))))))))))
)..))))....)))))).
SIMILARITIES
miRBase
mtr-MIR2111r
:
6e-31
PMRD
bna-miR2111a
:
0.000006
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454
references
[
1
] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M,
Plant Cell. 21:2780-2796(2009).
,
"Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"