ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR2657
source: miRBase, original name: mtr-MIR2657b (MI0012005)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTATTTCATCGATTTTGTTG miRNA* AGAAAAATGGTGAAAAGA mismatches: 2 bulges: 4 |
pre-miRNA
CCAGATTCCTTGACATTCAAGAAAAATGGTGAAAAGAAGAAATTTCAAGTTATTGTGCAAGCAAGAAGTGTGACTCCAAGGGGAAGATACCAATTTGGAG
AACTGCAATGGACAAATGGAAAACACATTGTAAGGAGTCCCGTTACTGTTCAACGCAAATGAAAGATTATTCCAAATAGTTGGATTTAATGTGGTATTAT
TGGATTATACTAGTATGCTTCTGTTATTTCATCGATTTTGTTGTTGTACTTGTTGCTGT
dot-bracket secondary structure
.(((........(((..(((.((((.(((((((((((((.............((((....))))..(((((((.(((((......(((((((....(((.
..((((((((...............)))))).))...)))(((((..(((((((......(((......)))......))))))).)))))))))))).)
)))))))))))......)))))....)))))))).)))).))).)))........))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
CCAGATTCCTTGACATTCAAGAAAAATGGTGAAAAGAAGAAATTTCAAGTTATTGTGCAAGCAAGAAGTGTGACTCCAAGGGGAAGATACCAATTTGGAG
AACTGCAATGGACAAATGGAAAACACATTGTAAGGAGTCCCGTTACTGTTCAACGCAAATGAAAGATTATTCCAAATAGTTGGATTTAATGTGGTATTAT
TGGATTATACTAGTATGCTTCTGTTATTTCATCGATTTTGTTGTTGTACTTGTTGCTGT
dot-bracket secondary structure
.(((........(((..(((.((((.(((((((((((((.............((((....))))..(((((((.(((((......(((((((....(((.
..((((((((...............)))))).))...)))(((((..(((((((......(((......)))......))))))).)))))))))))).)
)))))))))))......)))))....)))))))).)))).))).)))........))).
SIMILARITIES| miRBase mtr-MIR2657a: 2e-146 PMRD no hits microPC no hits | UniProt sp|O65351|SUBL_ARATH: 0.00001 RFAM no hits |
Identical with: mtr-MIR2657a from miRBase (MNEST040967) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
