miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST008926
species: Phaseolus vulgaris
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCATCATCATCATCTTAT

miRNA*
 AATTTGTGAAGGTTATGATG

mismatches: 4
bulges: 1
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pre-miRNA
 TATTCCTTCTCTTCTTCTTCATCATCATCATCATCATCTTATCCTCCTCCTCCTTTTCTTCATGTTCTTGAAGAACTAGAATTCATGGCAACTAACTGTA
GTTCATCAGCTCAAATCTCTCTTCAGAAATATGGTTCGTTTCTGAAATATGCCAACAAAGATTTGAAGCCCAAAGACTGCTCTGTCCCACAGAAAAGAGC
TGCAGGTGGTCCAGTAGCATTGAGAATCACAGCATCCATCAAGAACAAGATTTATGAGGACAAATCACAGGGCATAGTTGCTATGAAGATGAGAGTGGAG
AAATAATTTGTGAAGGTTATGATGAAGGGCCTCGTTATCATC

dot-bracket secondary structure
..............(((((((((((.(((.(((.((..((((.((((..(((.((((((....(((((...))))).))))(((((((((((((.(((..
......))).((((((((...(((((((((.......)))))))))............)))))))).((((...((..(((((.((.....))..)))))
.((..((((((((((...)))).).))))).)).(((.(((.(((.....))).))))))....))...)))).))))))))))))))).)))...))))
..))))..))))).))).))))))))))).............


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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