miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST002756
species: Trifolium pratense
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Trifolium pratense Trifolium Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTGGGACAGAGAGAGTAAT

miRNA*
 TACCCTCTGTCCCAAAATA

mismatches: 3
bulges: 2
View larger
pre-miRNA
 ATATGCCTATTAAGTACCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATGTATTTGGACTAAATTTTAAACCAAATTCATCAACTTT
CGTTGACCACTTTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATATAG

dot-bracket secondary structure
(((((..(((....(((.((((((((((((((((((((((((((.(((((((.(((((..(((.((((((.............)))))).)))..)))))
.))))))).))))))))))))))))))))))))))...)))..))).)))))..


SIMILARITIES
miRBase no hits

PMRD osa-miRf10603-akr: 0.000008

microPC no hits		UniProt no hits

RFAM MIR1122: 2e-19		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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