miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST054765
species: Vigna unguiculata
source: PMRD, original name: vun-miR2118

Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGCCGATTCCACCCATTCCTA

miRNA*
GGAGATGGGAGGGTCGGTAAAG

mismatches: 1
bulges: 2

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pre-miRNA
GAGGAAGTGATGGGAGATGGGAGGGTCGGTAAAGAATATATCTGAGACTCGACTCAATCTCGATCTCTCTCAGTGTTGTGTTGTTTTGTTTATCCTTTTG
CCGATTCCACCCATTCCTA
TGATTTCCTT


dot-bracket secondary structure
((((((((.(((((((.((((.((((((((((((((((((.((((((.((((.......))))....))))))...)))))).............)))))
)))).))).))))))))))
).))))))))



SIMILARITIES
miRBase gso-MIR2218: 0.000000000000002

PMRD gma-miR2118: 3e-69

microPC no hits
UniProt no hits

RFAM no hits

Identical with: gma-miR2118 from PMRD (MNEST048628)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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