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Species belonging to selected taxon:
Bos taurus
,
Ovis aries
,
Bos indicus
,
Bos sp.
,
Capra hircus
ABOUT THIS RECORD
ID:
MNEST033139
species:
Bos taurus
miRNA family:
mir-17
source:
miRBase, original name:
bta-mir-20a
(
MI0004741
)
Taxonomy by NCBI:
Bos taurus
Bos
Bovinae
Bovidae
Pecora
Ruminantia
Cetartiodactyla
Laurasiatheria
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAAAGTGCTTATAGTGCAGGTAG
miRNA*
ACTGCATTATGAGCACTTAAAGT
mismatches:
1
bulges:
2
View larger
pre-miRNA
GTAGCAC
TAAAGTGCTTATAGTGCAGGTAG
TGTTTAGTTATCT
ACTGCATTATGAGCACTTAAAGT
ACTGC
dot-bracket secondary structure
((((.((
(.(((((((((((((((((.(((
((......)).))
))))))))))))))))))..)))
.))))
SIMILARITIES
miRBase
eca-mir-20a
:
7e-35
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-17: 5e-24
Identical with:
sla-mir-20
from miRBase (
MNEST027596
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
references
[
1
] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP,
Physiol Genomics. 29:35-43(2007).
,
"Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"