miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oreochromis niloticus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Perca flavescens, Paralabidochromis chilotes, Lates calcarifer, Thunnus thynnus



ABOUT THIS RECORD

ID: MNEST009556
species: Paralabidochromis chilotes
miRNA family: miR-1558
source: miRNEST

Taxonomy by NCBI:
Paralabidochromis chilotes Paralabidochromis Haplochromini Pseudocrenilabrinae African cichlids Cichlidae Labroidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTGCTCTGATTGGAGCTCTGA

miRNA*
AGGGCCTCCATCACGGCTCCT

mismatches: 3
bulges: 2

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pre-miRNA
GGGTGTGGCCTCAGGGCCTCCATCACGGCTCCTTCCTGCTCTGATTGGAGCTCTGAGGTCAGAGG

dot-bracket secondary structure
.....((((((((((((.(((((((.(((........))).))).))))))))))))))))....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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